Gardner lab
home
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NMRview scripts:
One of the benefits of NMRview is ability to easily generate Tcl-based
scripts to automate various tasks and analyses. Here are several
such scripts that have been useful to us here in Dallas; we hope they
are useful both as tools and examples of programming NMRview.
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script / last modified
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description
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package for determining affinities
of protein/ligand complexes (beta test)
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useful startup script
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calculate random coil values for deuterium
exchange via Bai et al., >Proteins 17(1993):75
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package of scripts for displaying &
plotting multiple 2D datasets
(included in NMRview 5.0.x and later)
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useful shell script for starting NMRview,
automatically backing up databases. particularly useful with user.tcl
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plot all 2D x/y planes from 3D matrix
(superceded by PlotAllPlanes command in NMRview5.0.4)
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Caveats:
- scripts are currently tested with NMRview 5.0.x and 5.2.x, running with
Tcl 8.3 and Tk 8.3 (from NMRview distribution)
- more information on running scripts can be found in the header,
or in README files that accompany packages
- use these at your own risk --- and please
drop me a line
if you come across any unusual behavior or if you have any suggestions
for improvements.
Other local sources of NMRview information:
- Intro to Advanced NMRView Topics written by Carlos Amezcua and presented at the 2003 UAH Biomolecular NMR workshop. Includes introductions to CBCA analysis, chemical shift index and Gardner lab titration and screening analyses.
Off-site sources of NMRview information:
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